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Calpain 10 Homology Modeling with CYGAK and Increased Lipophilicity Leads to Greater Potency and Efficacy in Cells

  作者 SMITH MATTHEW A; MCINNES CAMPBELL; WHITAKER RYAN M; LINDSEY CHRISTOPHER C; COMER RICHARD F; BEESON CRAIG C; SCHNELLMANN RICK G  
  选自 期刊  ACS CHEMICAL BIOLOGY;  卷期  2012年7-8;  页码  1410-1419  
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[摘要]Calpain 10 is a ubiquitously expressed mitochondrial and cytosolic Ca2+-regulated cysteine protease in which overexpression or knockdown leads to mitochondrial dysfunction and cell death. We previously identified a potent and specific calpain 10 peptide inhibitor (CYGAK), but it was not efficacious in cells. Therefore, we created a homology model using the calpain 10 amino acid sequence and calpain 1 3-D structure and docked CYGAK in the active site. Using this model we modified the inhibitor to improve potency 2-fold (CYGAbuK). To increase cellular efficacy, we created CYGAK-S-phenyl-oleic acid heterodimers. Using renal mitochondrial matrix CYGAK, CYGAK-OC, and CYGAK-ON had IC50's of 70, 90, and 875 nM, respectively. Using isolated whole renal mitochondria CYGAK, CYGAK-OC, and CYGAK-ON had IC50's of 95, 196, and >10,000 nM, respectively. Using renal proximal tubular cells (RPTC) in primary culture, 30 min exposures to CYGAK-OC and CYGAbuK-OC decreased cellular calpain activity approximately 20% at 1 mu M, and concentrations up to 100 mu M had no additional effect. RPTC treated with 10 mu M CYGAK-OC for 24 h induced, accumulation of ATP synthase beta and NDUFB8, two calpain 10 substrates. In summary, we used molecular modeling to improve the potency of CYGAK, while creating CYGAK-oleic acid heterodimers to improve efficacy in cells. Since calpain 10 has been implicated in type 2 diabetes and renal aging, the use of this inhibitor may contribute to elucidating the role of calpain 10 in these and other diseases.

 
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