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From Laptop to Benchtop to Bedside: Structure-based Drug Design on Protein Targets

  作者 Chen, L; Morrow, JK; Tran, HT; Phatak, SS; Du-Cuny, L; Zhang, SX  
  选自 期刊  Current Pharmaceutical Design;  卷期  2012年18-9;  页码  1217-1239  
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[摘要]As an important aspect of computer-aided drug design, structure-based drug design brought a new horizon to pharmaceutical development. This in silico method permeates all aspects of drug discovery today, including lead identification, lead optimization, AD-MET prediction and drug repurposing. Structure-based drug design has resulted in fruitful successes drug discovery targeting protein-ligand and protein-protein interactions. Meanwhile, challenges, noted by low accuracy and combinatoric issues, may also cause failures. In this review, state-of-the-art techniques for protein modeling (e. g. structure prediction, modeling protein flexibility, etc.), hit identification/optimization (e. g. molecular docking, focused library design, fragment-based design, molecular dynamic, etc.), and polypharmacology design will be discussed. We will explore how structure-based techniques can facilitate the drug discovery process and interplay with other experimental approaches.

 
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