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Displacement of the canonical single-stranded DNA-binding protein in the Thermoproteales

  作者 Paytubi, S; McMahon, SA; Graham, S; Liu, HT; Botting, CH; Makarova, KS; Koonin, EV; Naismith, JH; White, MF  
  选自 期刊  Proceedings of the National Academy of Sciences of the United States of America;  卷期  2012年109-7;  页码  E398-E405  
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[摘要]ssDNA-binding proteins (SSBs) based on the oligonucleotide-binding fold are considered ubiquitous in nature and play a central role in many DNA transactions including replication, recombination, and repair. We demonstrate that the Thermoproteales, a clade of hyperthermophilic Crenarchaea, lack a canonical SSB. Instead, they encode a distinct ssDNA-binding protein that we term "ThermoDBP," exemplified by the protein Ttx1576 from Thermoproteus tenax. ThermoDBP binds specifically to ssDNA with low sequence specificity. The crystal structure of Ttx1576 reveals a unique fold and a mechanism for ssDNA binding, consisting of an extended cleft lined with hydrophobic phenylalanine residues and flanked by basic amino acids. Two ssDNA-binding domains are linked by a coiled-coil leucine zipper. ThermoDBP appears to have displaced the canonical SSB during the diversification of the Thermoproteales, a highly unusual example of the loss of a "ubiquitous" protein during evolution.

 
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