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Engineering and Structural Characterization of a Linear Polyubiquitin-Specific Antibody

  作者 Matsumoto, ML; Dong, KC; Yu, C; Phu, L; Gao, XX; Hannoush, RN; Hymowitz, SG; Kirkpatrick, DS; Dixit, VM; Kelley, RF  
  选自 期刊  Journal of Molecular Biology;  卷期  2012年418-40972;  页码  134-144  
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[摘要]Polyubiquitination is an essential posttranslational modification that plays critical roles in cellular signaling. PolyUb (polyubiquitin) chains are formed by linking the carboxyl-terminus of one Ub (ubiquitin) subunit to either a lysine residue or the amino-terminus of an adjacent Ub. Linkage through the amino-terminus results in linear polyubiquitination that has recently been demonstrated to be a key step in nuclear factor kappa B activation; however, tools to study linear chains have been lacking. We therefore engineered a linear-linkage-specific antibody that is functional in Western blot, immunoprecipitation, and immunofluorescence applications. A crystal structure of the linear-linkage-specific antibody Fab fragment in complex with linear diubiquitin provides molecular insight into the nature of linear chain specificity. We use the antibody to demonstrate that linear polyUb is up-regulated upon tumor necrosis factor a stimulation of cells, consistent with a critical role in nuclear factor kappa B signaling. This antibody provides an essential tool for further investigation of the function of linear chains. (C) 2011 Published by Elsevier Ltd.

 
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