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Multicohort Genomewide Association Study Reveals a New Signal of Protection Against HIV-1 Acquisition

  作者 Limou, S; Delaneau, O; van Manen, D; An, P; Sezgin, E; Le Clerc, S; Coulonges, C; Troyer, JL; Veldink, JH; van den Berg, LH; Spadoni, JL; Taing, L; Labib, T; Montes, M; Delfraissy, JF; Schachter, F; O'Brien, SJ; Buchbinder, S; van Natta, ML; Jabs, DA; Froguel, P; Schuitemaker, H; Winkler, CA; Zagury, JF  
  选自 期刊  Journal of Infectious Diseases;  卷期  2012年205-7;  页码  1155-1162  
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[摘要]Background. To date, onlymutations in CCR5 have been shown to confer resistance to human immunodeficiency virus type 1 (HIV-1) infection, and these explain only a small fraction of the observed variability in HIV susceptibility. Methods. We performed a meta-analysis between 2 independent European genomewide association studies, each comparing HIV-1 seropositive cases with normal population controls known to be HIV uninfected, to identify single-nucleotide polymorphisms (SNPs) associated with the HIV-1 acquisition phenotype. SNPs exhibiting P < 10(-5) in this first stage underwent second-stage analysis in 2 independent US cohorts of European descent. Results. After the first stage, a single highly significant association was revealed for the chromosome 8 rs6996198 with HIV-1 acquisition and was replicated in both second-stage cohorts. Across the 4 groups, the rs6996198-T allele was consistently associated with a significant reduced risk of HIV-1 infection, and the global meta-analysis reached genomewide significance: P-combined = 7.76 x 10(-8). Conclusions. We provide strong evidence of association for a common variant with HIV-1 acquisition in populations of European ancestry. This protective signal against HIV-1 infection is the first identified outside the CCR5 nexus. First clues point to a potential functional role for a nearby candidate gene, CYP7B1, but this locus warrants further investigation.

 
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