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Genome-wide evaluation and discovery of vertebrate A-to-I RNA editing sites

  作者 Maas, S; Sie, CPG; Stoev, I; Dupuis, DE; Latona, J; Porman, AM; Evans, B; Rekawek, P; Kluempers, V; Mutter, M; Gommans, WM; Lopresti, D  
  选自 期刊  Biochemical and Biophysical Research Communications;  卷期  2011年412-3;  页码  407-412  
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[摘要]RNA editing by adenosine deamination, catalyzed by adenosine deaminases acting on RNA (ADAR), is a post-transcriptional modification that contributes to transcriptome and proteome diversity and is widespread in mammals. Here we administer a bioinformatics search strategy to the human and mouse genomes to explore the landscape of A-to-I RNA editing. In both organisms we find evidence for high excess of A/G-type discrepancies (inosine appears as a guanosine in cloned cDNA) at non-polymorphic, non-synonymous codon sites over other types of discrepancies, suggesting the existence of several thousand recoding editing sites in the human and mouse genomes. We experimentally validate recoding-type A-to-I RNA editing in a number of human genes with high scoring positions including the coatomer protein complex subunit alpha (COPA) as well as cyclin dependent kinase CDK13. Published by Elsevier Inc.

 
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