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Selection of Carbonic Anhydrase IX Inhibitors from One Million DNA-Encoded Compounds

  作者 BULLER FABIAN; STEINER MARTINA; FREY KATHARINA; MIRCSOF DENNIS; SCHEUERMANN JOERG; KALISCH MARKUS; BUEHLMANN PETER; SUPURAN CLAUDIU T; NERI DARIO  
  选自 期刊  ACS CHEMICAL BIOLOGY;  卷期  2011年6-4;  页码  336-344  
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[摘要]DNA-encoded chemical libraries, i.e., collections of compounds individually coupled to distinctive DNA fragments serving as amplifiable identification barcodes, represent a new tool for the de novo discovery of small molecule ligands to target proteins of pharmaceutical interest. Here, we describe the design and synthesis of a novel DNA-encoded chemical library containing one million small molecules. The library was synthesized by combinatorial assembly of three sets of chemical building blocks using Diels-Alder cycloadditions and by, the stepwise build-up of the DNA barcodes. Model,selections were performed to test library performance and to develop a statistical method for the analysis of high throughput sequencing data: A library selection against carbonic anhydrase IX revealed a new class of submicromolar bis(sulfonamide) inhibitors. One of these inhibitors was synthesized in the absence of the DNA-tag and showed accumulation in hypoxic tumor tissue sections in vitro and tumor targeting in vivo.

 
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