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Exploring Drug Target Flexibility Using in Situ Click Chemistry: Application to a Mycobacterial Transcriptional Regulator

  作者 WILLAND NICOLAS; DESROSES MATTHIEU; TOTO PATRICK; DIRIE BERTRAND; LENS ZOE; VILLERET VINCENT; RUCKTOOA PRAKASH; LOCHT CAMILLE; BAULARD ALAIN; DEPREZ BENOIT  
  选自 期刊  ACS CHEMICAL BIOLOGY;  卷期  2010年5-11;  页码  1007-1013  
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[摘要]In situ click chemistry has been successfully applied to probe the ligand binding domain of EthR, a mycobacterial transcriptional regulator known to control the sensitivity of Mycobacterium tuberculosis to several antibiotics. Specific protein-templated ligands were generated in situ from one azide and six clusters of 10 acetylenic fragments. Comparative X-ray structures of EthR complexed with either clicked ligand BDM14950 or Its azide precursor showed ligand-dependent conformational Impacts on the protein architecture. This approach revealed two mobile phenylalanine residues that control the access to a previously hidden hydrophobic pocket that can be further exploited for the development of structurally diverse EthR inhibitors. This report shows that protein-directed in situ chemistry allows medicinal chemists to explore the conformational space of a ligand-bin ding pocket and is thus a valuable tool to guide drug design in the complex path of hit-to-lead processes.

 
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