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X-ray Crystal Structure of Human Heme Oxygenase-1 in Complex with 1-(Adamantan-1-yl)-2-(1H-imidazol-1-yl)ethanone: A Common Binding Mode for Imidazole-Based Heme Oxygenase-1 Inhibitors.

  作者 Rahman, Mona N.;Vlahakis, Jason Z.;Szarek, Walter A.;Nakatsu, Kanji;Jia, Zongchao;  
  选自 期刊  Journal of Medicinal Chemistry;  卷期  2008年51-19;  页码  5943-5952  
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[摘要]Development of inhibitors specific for heme oxygenases (HOs) should aid the understanding of the HO system and facilitate future therapeutic applications. The crystal structure of human HO-1 complexed with 1-(adamantan-1-yl)-2-(1H-imidazol-1-yl)ethanone (3) was detd. This inhibitor binds to the HO-1 distal pocket such that the imidazolyl moiety coordinates with heme iron while the adamantyl group is stabilized by a hydrophobic binding pocket. Distal helix flexibility, coupled with shifts in proximal residues and heme, acts to expand the distal pocket, thus accommodating the bulky inhibitor without displacing heme. Inhibitor binding effectively displaces the catalytically crit. distal water ligand. Comparison with the binding of another inhibitor (2) revealed a common binding mode, despite differing chem. structures beyond the imidazolyl moiety. The inhibitor binding pocket is flexible, yet contains well-defined subpockets to accommodate appropriate functional groups. On the basis of these structural insights, the authors rationalize binding features to optimize inhibitor design.

 
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