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The crystal structure of the Escherichia coli RNase E apoprotein and a mechanism for RNA degradation

  作者 Koslover, DJ; Callaghan, AJ; Marcaida, MJ; Garman, EF; Martick, M; Scott, WG; Luisi, BF  
  选自 期刊  Structure;  卷期  2008年16-8;  页码  1238-1244  
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[摘要]RNase E is an essential bacterial endoribonuclease involved in the turnover of messenger RNA and the maturation of structured RNA precursors in Escherichia coli. Here, we present the crystal structure of the E coli RNase E catalytic domain in the apo-state at 3.3 A. This structure indicates that, upon catalytic activation, RNase E undergoes a marked conformational change characterized by the coupled movement of two RNA-binding domains to organize the active site. The structural data suggest a mechanism of RNA recognition and cleavage that explains the enzyme's preference for substrates possessing a 5-monophosphate and accounts for the protective effect of a triphosphate cap for most transcripts. Internal flexibility within the quaternary structure is also observed, a finding that has implications for recognition of structured RNA substrates and for the mechanism of internal entry for a subset of substrates that are cleaved without 5'-end requirements.

 
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