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Structure-based optimization of click-based histone deacetylase inhibitors

  作者 Hou, JL; Feng, CR; Li, ZH; Fang, QH; Wang, HH; Gu, GX; Shi, YK; Liu, P; Xu, F; Yin, Z; Shen, J; Wang, P  
  选自 期刊  European Journal of Medicinal Chemistry;  卷期  2011年46-8;  页码  3190-3200  
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[摘要]Previously, we reported a click-chemistry based approach to the synthesis of a novel class of histone deacetylase (HDAC) inhibitors [1]. The lead compound NSC746457 was found to be as potent as SAHA (Vorinostat). Further optimization of NSC746457 by using the HDAC2-TSA crystal structure is described herein. Docking of NSC746457 into HDAC2 binding domain suggested that the hydrophobic residue Phe210 flanking the cap-group binding-motif could be exploited for structural optimization. Substitution on the methylene group of cinnamic cap region led to identification of more potent HDAC inhibitors: isopropyl derivative 5 and tert-butyl derivative 6, with an IC(50) value of 22 nM and 18 nM, respectively. (C) 2011 Elsevier Masson SAS. All rights reserved.

 
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