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Genome-wide Association Study Implicates PARD3B-based AIDS Restriction

  作者 Troyer, JL; Nelson, GW; Lautenberger, JA; Chinn, L; McIntosh, C; Johnson, RC; Sezgin, E; Kessing, B; Malasky, M; Hendrickson, SL; Li, G; Pontius, J; Tang, MZ; An, P; Winkler, CA; Limou, S; Le Clerc, S; Delaneau, O; Zagury, JF; Schuitemaker, H; van Manen, D; Bream, JH; Gomperts, ED; Buchbinder, S; Goedert, JJ; Kirk, GD; O'Brien, SJ  
  选自 期刊  Journal of Infectious Diseases;  卷期  2011年203-10;  页码  1491-1502  
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[摘要]Methods. European American HIV seroconverters (n = 755) were interrogated for single-nucleotide polymorphisms (SNPs) (n = 700,022) associated with progression to AIDS 1987 (Cox proportional hazards regression analysis, co-dominant model). Results. Association with slower progression was observed for SNPs in the gene PARD3B. One of these, rs11884476, reached genome-wide significance (relative hazard = 0.3; P =3. 370 x 10(-9)) after statistical correction for 700,022 SNPs and contributes 4.52% of the overall variance in AIDS progression in this study. Nine of the top-ranked SNPs define a PARD3B haplotype that also displays significant association with progression to AIDS (hazard ratio, 0.3; P = 3.220 x 10(-8)). One of these SNPs, rs10185378, is a predicted exonic splicing enhancer; significant alteration in the expression profile of PARD3B splicing transcripts was observed in B cell lines with alternate rs10185378 genotypes. This SNP was typed in European cohorts of rapid progressors and was found to be protective for AIDS 1993 definition (odds ratio, 0.43, P = .025). Conclusions. These observations suggest a potential unsuspected pathway of host genetic influence on the dynamics of AIDS progression.

 
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