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Synthesis of Cyclic Py-Im Polyamide Libraries

  作者 LI BENJAMIN C; MONTGOMERY DAVID C; PUCKETT JAMES W; DERVAN PETER B  
  选自 期刊  Journal of Organic Chemistry;  卷期  2013年78-1;  页码  124-133  
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[摘要]Cyclic Py-Im polyamides containing two GABA turn units exhibit enhanced DNA binding affinity, but extensive studies of their biological properties have been hindered due to synthetic inaccessibility. A facile modular approach toward cyclic polyamides has been developed via microwave-assisted solid-phase synthesis of hairpin amino acid oligomer intermediates followed by macrocyclization. A focused library of cyclic polyamides 1-7 targeted to the androgen response element (ARE) and the estrogen response element (ERE) were synthesized in 12-17% overall yield. The Fmoc protection strategy also allows for selective modifications on the GABA turn units that have been shown to improve cellular uptake properties. The DNA binding affinities of a library of cyclic polyamides were measured by DNA thermal denaturation assays and compared to the corresponding hairpin polyamides. Fluorescein-labeled cyclic polyamides have been synthesized and imaged via confocal microscopy in A549 and T47D cell lines. The IC50 values of compounds 1-7 and 9-11 were determined, revealing remarkably varying levels of cytotoxicity.

 
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