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High density gene expression microarrays and gene ontology analysis for identifying processes in implanted tissue engineering constructs

  作者 Lammers, G; Gilissen, C; Nillesen, STM; Uijtdewilligen, PJE; Wismans, RG; Veltman, JA; Daamen, WF; van Kuppevelt, TH  
  选自 期刊  BIOMATERIALS;  卷期  2010年31-32;  页码  8299-8312  
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[摘要]The in vivo performance of tissue-engineered constructs is often based on generally accepted read-out parameters, like (immuno)histology. In this study, high-density gene expression microarrays and gene ontology (GO) analysis were used as a read-out tool to identify the biological processes occurring after implantation of an acellular collagen-based skin construct using a rat full-thickness wound model. A freely-available program (DAVID) was used to identify up/downregulated biological processes (GO-terms) and results were compared to wound healing/regeneration without a construct. The entire process from RNA isolation to biological interpretation is explained step-by-step. Conventional (immuno) histology was used to validate the biological processes identified and indicate that microarray analysis may provide a valuable, fast and unbiased tool to evaluate the in vivo performance of tissue-engineered constructs. However, challenges remain e.g. with regards to the development of specific GO-terms and annotation of the (rat) genome. (C) 2010 Elsevier Ltd. All rights reserved.

 
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