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Retrospective group fusion similarity search based on eROCE evaluation metric

  作者 AVRAM SORIN I; CRISAN LUMINITA; BORA ALINA; PACUREANU LILIANA M; AVRAM STEFANA; KURUNCZI LUDOVIC  
  选自 期刊  Bioorganic & Medicinal Chemistry;  卷期  2013年21-5;  页码  1268-1278  
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[摘要]In this study, a simple evaluation metric, denoted as eROCE was proposed to measure the early enrichment of predictive methods. We demonstrated the superior robustness of eROCE compared to other known metrics throughout several active to inactive ratios ranging from 1:10 to 1:1000. Group fusion similarity search was investigated by varying 16 similarity coefficients, five molecular representations (binary and non-binary) and two group fusion rules using two reference structure set sizes. We used a dataset of 3478 actives and 43,938 inactive molecules and the enrichment was analyzed by means of eROCE. This retrospective study provides optimal similarity search parameters in the case of ALDH1A1 inhibitors. (C) 2013 Elsevier Ltd. All rights reserved.

 
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